If the volume of records to process does not really justify a "full grown" server-based solution, as described in the message by Karl Heinz Kremer, you could set up something semi-automatic, using an Acrobat Action (open file, export/extract data), followed by a process feeding the data into the database.
On Mac, you could also control Acrobat and other software using AppleScript; on Windows, VBScript has comparable possibilities. Such a solution would have to be initiated manually, but could be more cost effective.
Hope this can help.
Max Wyss.