With Acrobat XI Pro (and perhaps earlier Pro releases) one has the "fix hairlines" dialog available two ways.
As already mentioned there is the dialog available via the Print Production tools.
As well there is ---
In the "Fixups" there is a fixup type within the Page contents category.
This is the "Increase line width" fixup.
This increases line width to a given value if current line width is below a given threshold.
You can configure this fixup. Change of values for "If below", "Increase to", Unit type as well as some others are possible.
Compare the graphic at
http://help.adobe.com/en_US/acrobat/X/pro/using/WS58a04a822e3e50102bd615109794195ff-7b88.w.html
to:
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Be well...